PUBLICATIONS 2000-2009 (Updated September 2009)

1. Molina I, Beisson-Li Y, Beisson F, Ohlrogge JB, Pollard M (2009) Identification of an Arabidopsis Feruloyl-CoA transferase required for suberin synthesis. Plant Physiol [Epub ahead of print]

2. Yang Z, Ohlrogge JB (2009) Turnover of fatty acids during natural senescence of Arabidopsis, Brachypodium, and switchgrass and in Arabidopsis beta-oxidation mutants. Plant Physiol 150(4): 1981-1989

3. Ohlrogge J, Allen D, Berguson B, Dellapenna D, Shachar-Hill Y, Stymne S (2009) Energy  Driving on biomass. Science 324(5930):1019-1920

4. Stålberg K, Ståhl U, Stymne S, Ohlrogge J (2009) Characterization of two Arabidopsis thaliana acyltransferases with preference for lysophosphatidylethanolamine. BMC Plant Biol. 9: 60

5. Bates PD, Durrett TP, Ohlrogge JB, Pollard M (2009) Analysis of acyl fluxes through multiple pathways of triacylglycerol synthesis in developing soybean embryos. Plant Physiol 150(1): 55-72

6. Allen DK, Ohlrogge JB, Shachar-Hill Y (2009) The role of light in soybean seed filling metabolism. Plant J 58(2): 220-234

7. Li, Y, Pollard M, Ohlrogge J, Beisson F (2009) The cytochrome P450 monooxygenase CYP77A6 and the acyltransferase GPAT6 control cuticle nanomorphology and the occurrence of the archetypal cutin monomer 10,16-dihydroxypalmitate in Arabidopsis thaliana flowers.

8. Durrett TP, Benning C, Ohlrogge J (2008) Plant triacylglycerols as feedstocks for the production of biofuels. Plant J 54: 593-607

9. Pollard M, Beissson F, Li Y, Ohlrogge JB (2008) Building lipid barriers: biosynthesis of cutin and suberin. Trends Plant Science 13: 236-246

10. Lu Y, Savage LJ, Ajjawi I, Imre KM, Yoder DW, Benning C, Dellapenna D, Ohlrogge JB, Osteryoung KW, Weber AP, Wilkerson CG, Last RL (2008) New Connections across pathways and cellular processes: industrialized mutant screening reveals novel associations between diverse phenotypes in Arabidopsis. Plant Physiology. 146: 1482-1500

11. Molina I, Ohlrogge JB, Pollard M (2008) Deposition and localization of lipid polyester in developing seeds of Brassica napus and Arabidopsis thaliana. Plant J 53:437-449

12. Li Y, Beisson F, Koo AJ, Molina I, Pollard M, Ohlrogge J (2007) Identification of acyltransferases required for cutin biosynthesis and production of cutin with suberin-like monomers. Proc Natl Acad Sci U S A. 104:18339-18344

13. Bates PD, Ohlrogge JB, Pollard M (2007) Incorporation of newly synthesized fatty acids into cytosolic glycerolipids in pea leaves occurs via acyl editing. J Biol Chem 282:31206-16

14. Li Y, Beisson F, Ohlrogge J, Pollard M. (2007) Monoacylglycerols Are Components of Root Waxes and can be Produced in the Aerial Cuticle by Ectopic Expression of a Suberin-associated Acyltransferase. Plant Physiol  144:1267-1277

15. Allen DK, Shachar-Hill Y, Ohlrogge JB, (2007) Compartmental-Specific Labeling Information in ₁₃C Metabolic Flux Analysis of Plants. Phytochemistry 68:2197-2210

16. Alonso A, Goffman F, Ohlrogge J, Shachar-Hill Y, (2007) Carbon conversion efficiency and central metabolic fluxes in developing sunflower (Helianthus annuus L.) embryos. Plant J  52:296-308

17. Beisson F, Li Y, Bonaventure G, Pollard M, Ohlrogge JB. (2007) The acyltransferase GPAT5 is required for the synthesis of suberin in seed coat and root of Arabidopsis. Plant Cell 19:351-68

18. Weber APM, Weber K, Carr K, Wilkerson C, Ohlrogge JB (2007) Sampling the Arabidopsis Transcriptome with Massively-Parallel Pyrosequencing. Plant Physiol 144:32-42

19. Li Y, Beisson F, Pollard M, Ohlrogge J. (2006) Oil content of Arabidopsis seeds: the influence of seed anatomy, light and plant-to-plant variation.  Phytochemistry. 67:904-15.

20. Fridman E, Wang JH, Iijima Y, Froehlich JE, Gang DR, Ohlrogge J, Pichersky E (2005) Metabolic, Genomic, and Biochemical Analyses of Glandular Trichomes From the Wild Tomato Species Lycopersicon Hirsutum Identify a Key Enzyme in the Biosynthesis of Methylketones. Plant Cell 17: 1252-1267

21. Mhaske V, Beldjilali K, Ohlrogge J, Pollard M (2005) Isolation and Characterization of an Arabidopsis Thaliana Knockout Line for Phospholipid: Diacylglycerol Transacylase Gene (At5g13640). Plant Physiology and Biochemistry 43: 413-417

22. Goffman FD, Alonso AP, Schwender J, Shachar-Hill Y, Ohlrogge JB (2005) Light Enables a Very High Efficiency of Carbon Storage in Developing Embryos of Rapeseed. Plant Physiology 138: 2269-2279

23. Koo AJK, Fulda M, Browse J, Ohlrogge JB (2005) Identification of a Plastid Acyl-Acyl Carrier Protein Synthetase in Arabidopsis and Its Role in the Activation and Elongation of Exogenous Fatty Acids. Plant Journal 44: 620-632

24. Suh MC, Samuels AL, Jetter R, Kunst L, Pollard M, Ohlrogge J, Beisson F (2005) Cuticular Lipid Composition, Surface Structure, and Gene Expression in Arabidopsis Stem Epidermis. Plant Physiology 139: 1649-1665

25. Milcamps A, Tumaney AW, Paddock T, Pan DA, Ohlrogge J, Pollard M (2004) Isolation of a gene encoding a 1,2-diacylglycerol-sn-acetyl-CoA acetyltransferase from developing seeds of Euonymus alatus. J. Biol. Chem. 280:5370-7

26. Mhaske V, Beldjilali K, Ohlrogge J, Pollard M (2004) Isolation and characterization of an Arabidopsis knockout line for phospholipid:diacylglycerol transacylase gene (At5g13640). Plant Physiol. Biochem., accepted for publication

27. Schwender J, Goffman F, Ohlrogge JB, Shachar-Hill Y (2004) Rubisco Without the Calvin Cycle Improves the Carbon Efficiency of Developing Green Seeds. Nature 432: 779-782

28. Bonaventure G, Beisson F, Ohlrogge J, Pollard M (2004) Analysis of the Aliphatic Monomer Composition of Polyesters Associated With Arabidopsis Epidermis: Occurrence of Octadeca-Cis-6, Cis-9-Diene-1,18-Dioate as the Major Component. Plant Journal 40: 920-930

29. Ruuska SA, Schwender J, Ohlrogge JB (2004) The Capacity of Green Oilseeds to Utilize Photosynthesis to Drive Biosynthetic Processes. Plant Physiology 136: 2700-2709

30. Goffman FD, Ruckle M, Ohlrogge J, Shachar-Hill Y (2004) Carbon Dioxide Concentrations Are Very High in Developing Oilseeds. Plant Physiology and Biochemistry 42: 703-708

31. Klaus D, Ohlrogge JB, Neuhaus HE, Dormann P (2004) Increased Fatty Acid Production in Potato by Engineering of Acetyl-CoA Carboxylase. Planta 219: 389-396

32. Bonaventure G, Bao XM, Ohlrogge J, Pollard M (2004) Metabolic Responses to the Reduction in Palmitate Caused by Disruption of the FATB Gene in Arabidopsis. Plant Physiology 135: 1269-1279

33. Schwender J, Ohlrogge J, Shachar-Hill Y (2004) Understanding Flux in Plant Metabolic Networks. Current Opinion in Plant Biology 7: 309-317

34. Koo AJK, Ohlrogge JB, Pollard M (2004) On the Export of Fatty Acids From the Chloroplast. Journal of Biological Chemistry 279: 16101-16110

35. Tumaney AW, Ohlrogge JB, Pollard M (2004) Acetyl Coenzyme A Concentrations in Plant Tissues. Journal of Plant Physiology 161: 485-488

36. Gutierrez RA, Green PJ, Keegstra K, Ohlrogge JB (2004) Phylogenetic Profiling of the Arabidopsis Thaliana Proteome: What Proteins Distinguish Plants From Other Organisms? Genome Biology 5:

37. Ohlrogge J, Ruuska S, Mekhedov S, Girke T, Benning C (2003) Functional Genomics From a Plant Biochemist's Perspective. Acta Agriculturae Scandinavica Section B-Soil and Plant Science 53: 41-50

38. Schwender J, Ohlrogge JB, Shachar-Hill Y (2003) A Flux Model of Glycolysis and the Oxidative Pentosephosphate Pathway in Developing Brassica Napus Embryos. Journal of Biological Chemistry 278: 29442-29453

39. Suh MC, Kim MJ, Hur CG, Bae JM, Park YI, Chung CH, Kang CW, Ohlrogge JB (2003) Comparative Analysis of Expressed Sequence Tags From Sesamum Indicum and Arabidopsis Thaliana Developing Seeds. Plant Molecular Biology 52: 1107-1123

40. Nikolau BJ, Ohlrogge JB, Wurtele ES (2003) Plant Biotin-Containing Carboxylases. Archives of Biochemistry and Biophysics 414: 211-222

41. Beisson F, Koo AJK, Ruuska S, Schwender J, Pollard M, Thelen JJ, Paddock T, Salas JJ, Savage L, Milcamps A, Mhaske VB, Cho YH, Ohlrogge JB (2003) Arabidopsis Genes Involved in Acyl Lipid Metabolism. A 2003 Census of the Candidates, a Study of the Distribution of Expressed Sequence Tags in Organs, and a Web-Based Database. Plant Physiology 132: 681-697

42. Bao XM, Thelen JJ, Bonaventure G, Ohlrogge JB (2003) Characterization of Cyclopropane Fatty-Acid Synthase From Sterculia Foetida. Journal of Biological Chemistry 278: 12846-12853

43. Bonaventure G, Salas JJ, Pollard MR, Ohlrogge JB (2003) Disruption of the FATB gene in Arabidopsis demonstrates an essential role of saturated fatty acids in plant growth. Plant Cell 15: 1020-33

44. Thelen JJ, Ohlrogge JB (2002) Both Antisense and Sense Expression of Biotin Carboxyl Carrier Protein Isoform 2 Inactivates the Plastid Acetyl-Coenzyme A Carboxylase in Arabidopsis Thaliana. Plant Journal 32: 419-431

45. Koo AJK, Ohlrogge JB (2002) The Predicted Candidates of Arabidopsis Plastid Inner Envelope Membrane Proteins and Their Expression Profiles. Plant Physiology 130: 823-836

46. Schwender J, Ohlrogge JB (2002) Probing in Vivo Metabolism by Stable Isotope Labeling of Storage Lipids and Proteins in Developing Brassica Napus Embryos. Plant Physiology 130: 347-361

47. Suh MC, Schultz DJ, Ohlrogge JB (2002) What Limits Production of Unusual Monoenoic Fatty Acids in Transgenic Plants? Planta 215: 584-595

48. Salas JJ, Ohlrogge JB (2002) Characterization of Substrate Specificity of Plant Fata and Fatb Acyl-Acp Thioesterases. Archives of Biochemistry and Biophysics 403: 25-34

49. Ruuska SA, Girke T, Benning C, Ohlrogge JB (2002) Contrapuntal Networks of Gene Expression During Arabidopsis Seed Filling. Plant Cell 14: 1191-1206

50. Bao X, Katz S, Pollard M, Ohlrogge J (2002) Carbocyclic fatty acids in plants: biochemical and molecular genetic characterization of cyclopropane fatty acid synthesis of Sterculiafoetida. Proc Natl Acad Sci U S A 99: 7172-7

51. Thelen JJ, Ohlrogge JB (2002) The Multisubunit Acetyl-Coa Carboxylase Is Strongly Associated With the Chloroplast Envelope Through Non-Ionic Interactions to the Carboxyltransferase Subunits. Archives of Biochemistry and Biophysics 400: 245-257

52. Thelen JJ, Ohlrogge JB (2002) Metabolic Engineering of Fatty Acid Biosynthesis in Plants. Metabolic Engineering 4: 12-21

53. Bonaventure G, Ohlrogge JB (2002) Differential Regulation of mRNA Levels of Acyl Carrier Protein Isoforms in Arabidopsis. Plant Physiology 128: 223-235

54. Ruuska SA, Ohlrogge JB (2001) Protocol for Small-Scale Rna Isolation and Transcriptional Profiling of Developing Arabidopsis Seeds. Biotechniques 31: 752-+

55. Thelen JJ, Mekhedov S, Ohlrogge JB (2001) Brassicaceae Express Multiple Isoforms of Biotin Carboxyl Carrier Protein in a Tissue-Specific Manner. Plant Physiology 125: 2016-2028

56. Mekhedov S, Cahoon EB, Ohlrogge J (2001) An Unusual Seed-Specific 3-Ketoacyl-Acp Synthase Associated With the Biosynthesis of Petroselinic Acid in Coriander. Plant Molecular Biology 47: 507-518

57. White JA, Todd T, Newman T, Focks N, Girke T, De Ilarduya OM, Jaworski JG, Ohlrogge JB, Benning C (2000) A New Set of Arabidopsis Expressed Sequence Tags From Developing Seeds. The Metabolic Pathway From Carbohydrates to Seed Oil. Plant Physiology 124: 1582-1594

58. Thelen JJ, Mekhedov S, Ohlrogge JB (2000) Biotin Carboxyl Carrier Protein Isoforms in Brassicaceae Oilseeds. Biochemical Society Transactions 28: 595-598

59. Ohlrogge J, Pollard M, Bao X, Focke M, Girke T, Ruuska S, Mekhedov S, Benning C (2000) Fatty Acid Synthesis: From CO₂ to Functional Genomics. Biochemical Society Transactions 28: 567-574

60. Girke T, Todd J, Ruuska S, White J, Benning C, Ohlrogge J (2000) Microarray Analysis of Developing Arabidopsis Seeds. Plant Physiology 124: 1570-1581

61. Schultz DJ, Suh MC, Ohlrogge JB (2000) Stearoyl-Acyl Carrier Protein and Unusual Acyl-Acyl Carrier Protein Desaturase Activities Are Differentially Influenced by Ferredoxin. Plant Physiology 124: 681-692

62. Ohlrogge J, Benning C (2000) Unraveling Plant Metabolism by EST Analysis. Current Opinion in Plant Biology 3: 224-228

63. Dormann P, Voelker TA, Ohlrogge JB (2000) Accumulation of Palmitate in Arabidopsis Mediated by the Acyl-Acyl Carrier Protein Thioesterase FATB1. Plant Physiol 123: 637-644

64. Bao X, Focke M, Pollard M, Ohlrogge J (2000) Understanding in vivo carbon precursor supply for fatty acid synthesis in leaf tissue. Plant J 22: 39-50

65. Schultz DJ, Ohlrogge JB (2000) Biosynthesis of Triacylglycerol in Thunbergia Alata: Additional Evidence for Involvement of Phosphatidylcholine in Unusual Monoenoic Oil Production. Plant Physiology and Biochemistry 38: 169-175

66. Mekhedov S, De Ilarduya OM, Ohlrogge J (2000) Toward a Functional Catalog of the Plant Genome. A Survey of Genes for Lipid Biosynthesis. Plant Physiology 122: 389-401